metalsinglecell.gr.ligrec

metalsinglecell.gr.ligrec(adata, cluster_key, interactions, n_perms=100, seed=0, key_added=None, copy=False)

Ligand-receptor permutation test (sq.gr.ligrec); writes uns[key_added] (means/pvalues).

interactions is a list of (ligand, receptor) gene-symbol pairs.

Parameters:

• n_perms (int)

• seed (int)

• key_added (str | None)

• copy (bool)