metalsinglecell.pp.scrublet#

metalsinglecell.pp.scrublet(adata, sim_doublet_ratio=2.0, expected_doublet_rate=0.05, n_neighbors=None, n_pcs=30, random_state=0, copy=False)[source]#

Doublet detection (sc.pp.scrublet); writes obs['doublet_score']/['predicted_doublet'].

Parameters:

  • sim_doublet_ratio (float)

  • expected_doublet_rate (float)

  • n_neighbors (int | None)

  • n_pcs (int)

  • random_state (int)

  • copy (bool)