metalsinglecell.tl.tsne

metalsinglecell.tl.tsne(adata, use_rep='X_pca', perplexity=30.0, n_components=2, random_state=0, copy=False)

t-SNE (sc.tl.tsne); writes adata.obsm['X_tsne'].

Parameters:

• use_rep (str)

• perplexity (float)

• n_components (int)

• random_state (int)

• copy (bool)