metalsinglecell.tl.umap

metalsinglecell.tl.umap(adata, min_dist=0.5, spread=1.0, n_components=2, n_epochs=None, random_state=0, copy=False)

UMAP embedding (sc.tl.umap); writes adata.obsm['X_umap'].

Parameters:

• min_dist (float)

• spread (float)

• n_components (int)

• n_epochs (int | None)

• random_state (int)

• copy (bool)