metalsinglecell.pp.harmony_integrate#

metalsinglecell.pp.harmony_integrate(adata, key, basis='X_pca', adjusted_basis='X_pca_harmony', random_state=0, copy=False)[source]#

Harmony batch integration (sc.external.pp.harmony_integrate); writes obsm[adjusted_basis].

Parameters:
  • basis (str)

  • adjusted_basis (str)

  • random_state (int)

  • copy (bool)