Index B | C | D | E | F | H | K | L | N | P | R | S | T | U B bbknn() (in module metalsinglecell.pp) C calculate_niche() (in module metalsinglecell.gr) calculate_qc_metrics() (in module metalsinglecell.pp) co_occurrence() (in module metalsinglecell.gr) D diffmap() (in module metalsinglecell.tl) draw_graph() (in module metalsinglecell.tl) E embedding_density() (in module metalsinglecell.tl) F filter_cells() (in module metalsinglecell.pp) filter_genes() (in module metalsinglecell.pp) H harmony_integrate() (in module metalsinglecell.pp) highly_variable_genes() (in module metalsinglecell.pp) K kmeans() (in module metalsinglecell.tl) L leiden() (in module metalsinglecell.tl) ligrec() (in module metalsinglecell.gr) log1p() (in module metalsinglecell.pp) louvain() (in module metalsinglecell.tl) N neighbors() (in module metalsinglecell.pp) normalize_pearson_residuals() (in module metalsinglecell.pp) normalize_total() (in module metalsinglecell.pp) P pca() (in module metalsinglecell.pp) R rank_genes_groups() (in module metalsinglecell.tl) regress_out() (in module metalsinglecell.pp) S scale() (in module metalsinglecell.pp) score_genes() (in module metalsinglecell.tl) score_genes_cell_cycle() (in module metalsinglecell.tl) scrublet() (in module metalsinglecell.pp) spatial_autocorr() (in module metalsinglecell.gr) spatial_neighbors() (in module metalsinglecell.gr) T tsne() (in module metalsinglecell.tl) U umap() (in module metalsinglecell.tl)